2022(1) •
2022,(1) •
Alignment(1) •
Assembly(1) •
BUSCO(1) •
Bhattacharya(3) •
DNA(19) •
DNA,(1) •
GO(1) •
HI(1) •
Hawaii(1) •
KEGG(1) •
Lab,(3) •
Microbiome(1) •
Montipora(1) •
PCR(1) •
PCR,(5) •
Pacu(1) •
Pocillopora,(1) •
Protein,(1) •
Protocol(4) •
QC(1) •
RAxML(1) •
RNA(19) •
RNASeq(3) •
RSEM(1) •
Trinity(1) •
amplicon(1) •
annotation(1) •
antibody(1) •
biogeography,(1) •
bioinformatics(1) •
capitata(1) •
de novo(1) •
detection(1) •
eggs(4) •
electrophoresis(1) •
fieldwork,(1) •
gel(1) •
genotyping(1) •
github(1) •
how to(1) •
lab resources(1) •
larvae(14) •
microbiome(1) •
pcr(1) •
phylogeny(1) •
planning,(1) •
ploidy(1) •
primer(1) •
psyTrans(1) •
sperm(4)
2022 1
- 2022 Hawaii Field Plan • March 30, 2022
2022, 1
- Protocol for 16S Amplicfication of coral and reef sediment with 515F and 806R V4 primers • June 21, 2022
Alignment 1
- M. capitata RNAseq QC, Alignment, Assembly Bioinformatic Pipeline • August 15, 2020
Assembly 1
- M. capitata RNAseq QC, Alignment, Assembly Bioinformatic Pipeline • August 15, 2020
BUSCO 1
- Testing different methods for extracting symbiont reads from a *M. capitata* holobiont transcriptome • July 2, 2021
Bhattacharya 3
- Development of controls for Pocillopora acuta triploidy detection via qPCR • August 18, 2022
- Protocol for 16S Amplicfication of coral and reef sediment with 515F and 806R V4 primers • June 21, 2022
- Validation of 515F and 806R primers for M. capitata V4 microbiome analyses • May 24, 2023
DNA 19
- Acropora Eggs and Sperm DNA/RNA Extraction Batch 2 • May 28, 2019
- Acropora Eggs and Sperm DNA/RNA Extraction Batch 3 • August 20, 2019
- Acropora Larvae DNA/RNA Extraction Test Results • May 22, 2019
- Acropora hyacinthus Eggs and Sperm DNA/RNA Extraction Batch 1 • May 24, 2019
- DNA Extraction Protocol for Adult Corals • April 27, 2022
- Montipora Larvae DNA/RNA Extraction Batch 1 • March 8, 2019
- Montipora Larvae DNA/RNA Extraction Batch 10 • May 6, 2019
- Montipora Larvae DNA/RNA Extraction Batch 11 • May 7, 2019
- Montipora Larvae DNA/RNA Extraction Batch 12 • May 22, 2019
- Montipora Larvae DNA/RNA Extraction Batch 2 • March 21, 2019
- Montipora Larvae DNA/RNA Extraction Batch 3 • March 21, 2019
- Montipora Larvae DNA/RNA Extraction Batch 4 • April 1, 2019
- Montipora Larvae DNA/RNA Extraction Batch 5 • April 1, 2019
- Montipora Larvae DNA/RNA Extraction Batch 6 • April 18, 2019
- Montipora Larvae DNA/RNA Extraction Batch 7 • April 25, 2019
- Montipora Larvae DNA/RNA Extraction Batch 8 • April 26, 2019
- Montipora Larvae DNA/RNA Extraction Batch 9 • April 29, 2019
- Protocol for DNA/RNA Extractions of Montipora Coral Larvae Using Zymo-Duet Extraction Kit • April 25, 2019
- Testing Number of Montipora Larvae Needed for DNA/RNA Extraction • March 8, 2019
DNA, 1
- Bhattacharya Lab Gel Electrophoresis Protocol • March 22, 2022
GO 1
- Mapping GO and Kegg terms to the M. capitata genome • October 8, 2020
HI 1
- 2022 Hawaii Field Plan • March 30, 2022
Hawaii 1
- Protocol for 16S Amplicfication of coral and reef sediment with 515F and 806R V4 primers • June 21, 2022
KEGG 1
- Mapping GO and Kegg terms to the M. capitata genome • October 8, 2020
Lab, 3
- Development of controls for Pocillopora acuta triploidy detection via qPCR • August 18, 2022
- Protocol for 16S Amplicfication of coral and reef sediment with 515F and 806R V4 primers • June 21, 2022
- Validation of 515F and 806R primers for M. capitata V4 microbiome analyses • May 24, 2023
Microbiome 1
- Protocol for 16S Amplicfication of coral and reef sediment with 515F and 806R V4 primers • June 21, 2022
Montipora 1
- Protocol for 16S Amplicfication of coral and reef sediment with 515F and 806R V4 primers • June 21, 2022
PCR 1
- How to Run the Bhattacharya Lab PCR Machine (Thermocycler) • June 9, 2022
PCR, 5
- Development of controls for Pocillopora acuta triploidy detection via qPCR • August 18, 2022
- Protocol for 16S Amplicfication of coral and reef sediment with 515F and 806R V4 primers • June 21, 2022
- Protocol for coral colony genotyping using the 18S-28S rDNA marker • January 10, 2023
- Validation of 515F and 806R primers for M. capitata V4 microbiome analyses • May 24, 2023
Pacu 1
Pocillopora, 1
Protein, 1
- Bhattacharya Lab Dot Blot Assay Protocol • April 2, 2022
Protocol 4
- M. capitata RNAseq QC, Alignment, Assembly Bioinformatic Pipeline • August 15, 2020
- Mapping GO and Kegg terms to the M. capitata genome • October 8, 2020
- Testing different methods for extracting symbiont reads from a *M. capitata* holobiont transcriptome • July 2, 2021
- Workflow to test if canditate amplicon regions can reconstitute the full phylogeny with all SNPs • February 27, 2022
QC 1
- M. capitata RNAseq QC, Alignment, Assembly Bioinformatic Pipeline • August 15, 2020
RAxML 1
- Workflow to test if canditate amplicon regions can reconstitute the full phylogeny with all SNPs • February 27, 2022
RNA 19
- Acropora Eggs and Sperm DNA/RNA Extraction Batch 2 • May 28, 2019
- Acropora Eggs and Sperm DNA/RNA Extraction Batch 3 • August 20, 2019
- Acropora Larvae DNA/RNA Extraction Test Results • May 22, 2019
- Acropora hyacinthus Eggs and Sperm DNA/RNA Extraction Batch 1 • May 24, 2019
- Montipora Larvae DNA/RNA Extraction Batch 1 • March 8, 2019
- Montipora Larvae DNA/RNA Extraction Batch 10 • May 6, 2019
- Montipora Larvae DNA/RNA Extraction Batch 11 • May 7, 2019
- Montipora Larvae DNA/RNA Extraction Batch 12 • May 22, 2019
- Montipora Larvae DNA/RNA Extraction Batch 2 • March 21, 2019
- Montipora Larvae DNA/RNA Extraction Batch 3 • March 21, 2019
- Montipora Larvae DNA/RNA Extraction Batch 4 • April 1, 2019
- Montipora Larvae DNA/RNA Extraction Batch 5 • April 1, 2019
- Montipora Larvae DNA/RNA Extraction Batch 6 • April 18, 2019
- Montipora Larvae DNA/RNA Extraction Batch 7 • April 25, 2019
- Montipora Larvae DNA/RNA Extraction Batch 8 • April 26, 2019
- Montipora Larvae DNA/RNA Extraction Batch 9 • April 29, 2019
- Protocol for DNA/RNA Extractions of Montipora Coral Larvae Using Zymo-Duet Extraction Kit • April 25, 2019
- RNA Extraction Protocol for Adult Corals • October 12, 2022
- Testing Number of Montipora Larvae Needed for DNA/RNA Extraction • March 8, 2019
RNASeq 3
- M. capitata RNAseq QC, Alignment, Assembly Bioinformatic Pipeline • August 15, 2020
- Mapping GO and Kegg terms to the M. capitata genome • October 8, 2020
- Testing different methods for extracting symbiont reads from a *M. capitata* holobiont transcriptome • July 2, 2021
RSEM 1
- Testing different methods for extracting symbiont reads from a *M. capitata* holobiont transcriptome • July 2, 2021
Trinity 1
- Testing different methods for extracting symbiont reads from a *M. capitata* holobiont transcriptome • July 2, 2021
amplicon 1
- Workflow to test if canditate amplicon regions can reconstitute the full phylogeny with all SNPs • February 27, 2022
annotation 1
- Mapping GO and Kegg terms to the M. capitata genome • October 8, 2020
antibody 1
- Bhattacharya Lab Dot Blot Assay Protocol • April 2, 2022
biogeography, 1
- Protocol for 16S Amplicfication of coral and reef sediment with 515F and 806R V4 primers • June 21, 2022
bioinformatics 1
- M. capitata RNAseq QC, Alignment, Assembly Bioinformatic Pipeline • August 15, 2020
capitata 1
- Protocol for 16S Amplicfication of coral and reef sediment with 515F and 806R V4 primers • June 21, 2022
de novo 1
- Testing different methods for extracting symbiont reads from a *M. capitata* holobiont transcriptome • July 2, 2021
detection 1
eggs 4
- Acropora Eggs and Sperm DNA/RNA Extraction Batch 2 • May 28, 2019
- Acropora Eggs and Sperm DNA/RNA Extraction Batch 3 • August 20, 2019
- Acropora Larvae DNA/RNA Extraction Test Results • May 22, 2019
- Acropora hyacinthus Eggs and Sperm DNA/RNA Extraction Batch 1 • May 24, 2019
electrophoresis 1
- Bhattacharya Lab Gel Electrophoresis Protocol • March 22, 2022
fieldwork, 1
- 2022 Hawaii Field Plan • March 30, 2022
gel 1
- Bhattacharya Lab Gel Electrophoresis Protocol • March 22, 2022
genotyping 1
- Protocol for coral colony genotyping using the 18S-28S rDNA marker • January 10, 2023
github 1
- How to create your first post • December 2, 2019
how to 1
- How to create your first post • December 2, 2019
lab resources 1
- How to create your first post • December 2, 2019
larvae 14
- Montipora Larvae DNA/RNA Extraction Batch 1 • March 8, 2019
- Montipora Larvae DNA/RNA Extraction Batch 10 • May 6, 2019
- Montipora Larvae DNA/RNA Extraction Batch 11 • May 7, 2019
- Montipora Larvae DNA/RNA Extraction Batch 12 • May 22, 2019
- Montipora Larvae DNA/RNA Extraction Batch 2 • March 21, 2019
- Montipora Larvae DNA/RNA Extraction Batch 3 • March 21, 2019
- Montipora Larvae DNA/RNA Extraction Batch 4 • April 1, 2019
- Montipora Larvae DNA/RNA Extraction Batch 5 • April 1, 2019
- Montipora Larvae DNA/RNA Extraction Batch 6 • April 18, 2019
- Montipora Larvae DNA/RNA Extraction Batch 7 • April 25, 2019
- Montipora Larvae DNA/RNA Extraction Batch 8 • April 26, 2019
- Montipora Larvae DNA/RNA Extraction Batch 9 • April 29, 2019
- Protocol for DNA/RNA Extractions of Montipora Coral Larvae Using Zymo-Duet Extraction Kit • April 25, 2019
- Testing Number of Montipora Larvae Needed for DNA/RNA Extraction • March 8, 2019
microbiome 1
pcr 1
- Workflow to test if canditate amplicon regions can reconstitute the full phylogeny with all SNPs • February 27, 2022
phylogeny 1
- Workflow to test if canditate amplicon regions can reconstitute the full phylogeny with all SNPs • February 27, 2022
planning, 1
- 2022 Hawaii Field Plan • March 30, 2022
ploidy 1
primer 1
- Workflow to test if canditate amplicon regions can reconstitute the full phylogeny with all SNPs • February 27, 2022
psyTrans 1
- Testing different methods for extracting symbiont reads from a *M. capitata* holobiont transcriptome • July 2, 2021
sperm 4
- Acropora Eggs and Sperm DNA/RNA Extraction Batch 2 • May 28, 2019
- Acropora Eggs and Sperm DNA/RNA Extraction Batch 3 • August 20, 2019
- Acropora Larvae DNA/RNA Extraction Test Results • May 22, 2019
- Acropora hyacinthus Eggs and Sperm DNA/RNA Extraction Batch 1 • May 24, 2019